PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10425932g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 272aa    MW: 31026.3 Da    PI: 9.525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10425932g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32195253159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r ++dp++v++tYeg H h+
  MA_10425932g0020 195 LDDGYRWRKYGQKSVKNNLYPRSYYRCTHQTCSVKKQVQRLSRDPEIVVTTYEGIHMHP 253
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-33180254IPR003657WRKY domain
SuperFamilySSF1182901.03E-28187254IPR003657WRKY domain
PROSITE profilePS5081129.057190255IPR003657WRKY domain
SMARTSM007747.5E-38195254IPR003657WRKY domain
PfamPF031067.3E-26196253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNPDLSSTAN SSCFPRINGG INGLSSSKTH SPPAPSHSLT EFMQTQSQAH DQGKNEHVNS  60
MKNIQQQQQD QMNQTACNPN IWKPSWLSQT TTSDKEEAVQ RREFNVPGGF PESNSSGDTQ  120
ARLSAMRGIT GLEGQYFPAV REEHNKGISE SERLQLGEND GGNVKDNRSR SRGKLEKRIR  180
RPRYAFQTRS QVDILDDGYR WRKYGQKSVK NNLYPRSYYR CTHQTCSVKK QVQRLSRDPE  240
IVVTTYEGIH MHPSEKSMES FDHILNQMQF LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-25187252974Probable WRKY transcription factor 4
2lex_A8e-25187252974Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1118430.0BT111843.1 Picea glauca clone GQ03304_E19 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NZ050.0A9NZ05_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.16e-49WRKY DNA-binding protein 75