PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10426323g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 322aa MW: 35697.9 Da PI: 9.737

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10426323g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.3	5.3e-48	68	192	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 GfrF+Ptdeel+ +yLkkkv+++++++ ++i+e+d y+++PwdLp+k+ +ekewyfFs+rd+ky ++ r+nr++ sgyWkatg+dk+++ + MA_10426323g0010 68 TGFRFDPTDEELLIHYLKKKVSSSPFPA-SIIAEIDPYSHDPWDLPAKAFFGEKEWYFFSPRDRKYLNEARPNRSAGSGYWKATGTDKPIVIT 159 7*************************.89***********8777899************************************ PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk+Lvfy+g +g kt+W+mhey l MA_10426323g0010 160 SSQKVGVKKSLVFYSGMPLEGLKTNWIMHEYGL 192 *****************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-57	65	216	IPR003441	NAC domain
PROSITE profile	PS51005	54.039	66	217	IPR003441	NAC domain
Pfam	PF02365	8.5E-26	68	191	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MPRCCPCQTS CQPAGARLSA VSKRRLTGLE RSGGRRAAGG NHKRETLLSK MCQPAGARLS 60 AVSKRRLTGF RFDPTDEELL IHYLKKKVSS SPFPASIIAE IDPYSHDPWD LPAKAFFGEK 120 EWYFFSPRDR KYLNEARPNR SAGSGYWKAT GTDKPIVITS SQKVGVKKSL VFYSGMPLEG 180 LKTNWIMHEY GLAETLPSER KGSMLLDDWV LCRIYEKVSH SPMVVSCQDV KALSPGVQRT 240 QQKSAMPKFS SFSWLLQREG PFMESLLSHA ASNVNNAAMS SVESPPSLQV APQLINSSES 300 RSDVPMSMSF NCDEVSSVYA AK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-66	69	219	20	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-66	69	219	20	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-66	69	219	20	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-66	69	219	20	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-66	69	221	23	172	NAC domain-containing protein 19
3swm_B	1e-66	69	221	23	172	NAC domain-containing protein 19
3swm_C	1e-66	69	221	23	172	NAC domain-containing protein 19
3swm_D	1e-66	69	221	23	172	NAC domain-containing protein 19
3swp_A	1e-66	69	221	23	172	NAC domain-containing protein 19
3swp_B	1e-66	69	221	23	172	NAC domain-containing protein 19
3swp_C	1e-66	69	221	23	172	NAC domain-containing protein 19
3swp_D	1e-66	69	221	23	172	NAC domain-containing protein 19
4dul_A	1e-66	69	219	20	167	NAC domain-containing protein 19
4dul_B	1e-66	69	219	20	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT119808	0.0	BT119808.1 Picea glauca clone GQ04110_F11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095244.1	8e-77	NAC transcription factor 56-like
TrEMBL	D5ABS0	1e-145	D5ABS0_PICSI; Uncharacterized protein
STRING	ERN03380	3e-76	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	2e-73	NAC domain containing protein 47