PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10426586g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 235aa    MW: 26505.6 Da    PI: 9.2072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10426586g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-202069255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++GVr ++ +gr++AeIrdp +   ++r++lg+f+taeeAa+a++ a+++l+g
  MA_10426586g0010 20 HFRGVRKRP-WGRFAAEIRDPMK---KTRVWLGTFDTAEEAARAYDSAARALRG 69
                      69*******.**********843...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.50E-321979No hitNo description
Gene3DG3DSA:3.30.730.101.0E-312077IPR001471AP2/ERF domain
PROSITE profilePS5103222.9852077IPR001471AP2/ERF domain
SMARTSM003803.1E-382083IPR001471AP2/ERF domain
PfamPF008471.2E-132069IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-222077IPR016177DNA-binding domain
PRINTSPR003674.2E-112132IPR001471AP2/ERF domain
PRINTSPR003674.2E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMKQPKVAQK DVGSAYKEAH FRGVRKRPWG RFAAEIRDPM KKTRVWLGTF DTAEEAARAY  60
DSAARALRGS KAKTNFAIVP PCDDRSTSLS STVESWSSPK NNTNNNSRRS LSLNKTEDRR  120
HKIDLNIAQE EFGRKSASPY LEDKIPNISK KQKIFKRSCA PDRAAEAYNW SRQQYPQRGL  180
DPNACHSDCD SSSSVVDDDE VGTSSLRPQG IRLLPDLNLP PCDEEEDFSS MLLHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-211778264ATERF1
3gcc_A4e-211778264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1010300.0BT101030.1 Picea glauca clone GQ0064_P20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QXH75e-88A0A0C9QXH7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_1413_2210 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-23erf domain protein 9