PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10426809g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 455aa    MW: 50041.7 Da    PI: 4.8516
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10426809g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS222.32.4e-68834531374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l +lL++cAea+s++ + la+ +L rl+ l+sp+g +m+R+a y+  AL +  ++      +  +++++ ++++ + l alkl++ + P++++
  MA_10426809g0010  83 LLHLLIACAEAMSQEAQDLAEIILFRLQGLVSPTGFTMERVAYYLFDALFHSNVN------SLAHVKPNGKSTERNFLGALKLLHVAYPYIRI 169
                       579**********************************************988777......333444444455899***************** PP

              GRAS  94 shltaNqaIleavege...erv..HiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176
                        ++taNq Ileav+ +   + v  H+iDfdi++G+QWp+L++aL +    + + +lRiT+++ ++++   s    + tg+rL+++A+++g+pf
  MA_10426809g0010 170 PQFTANQCILEAVAAAggaSNVgiHVIDFDIMEGMQWPPLMEALRNNGnyHVTGHLRITAIKWADNEegeSLLYSSDTGRRLSEYASSVGIPF 262
                       *************98876644444********************8765445578********988886666667799**************** PP

              GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve..qeadhnsesFlerflealeyysal 267
                       +f+ +     +   l++   ++gE l+Vn++ ql +++  ++  +s+  e+L   ++l+P  v+++   + a++n+++Fle f+++le   a+
  MA_10426809g0010 263 SFQEM-----DLAGLKDVLPQEGELLVVNCMWQLPHMF--NLRNKSQLLEFLVGARHLNPVAVTLATgpHGAERNRANFLESFCRCLEELCAI 348
                       ***85.....666667778899****************..777777889****************973366999******************* PP

              GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgsl 358
                       fdslea+lp++  +r++vEr ++g++ ++ v+  g +  +r+    +      ++G+++ ++s+ ++  a++ l   + s+ yrve+  +++l
  MA_10426809g0010 349 FDSLEAGLPEHGLARAMVERTFFGPAMSSRVMSYGLA-ANRQS---NVVGLPLDCGYGEGSISNANMLYARYTLLCSGgSRSYRVESVgHHQL 437
                       ***********************************98.33333...33456679*****************9888888899*****7648899 PP

              GRAS 359 vlgWkdrpLvsvSaWr 374
                       vl W + pLv++S W+
  MA_10426809g0010 438 VLKWASTPLVWISTWK 453
                       9**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.03657431IPR005202Transcription factor GRAS
PfamPF035148.4E-6683453IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDAELQDAIT DIEEDLISSP RKDTDSTDPV TPEHPDLIAG DRLVSDYAET NSSSKSESIV  60
TDEAVSSSVD VDHGSVEYKG LRLLHLLIAC AEAMSQEAQD LAEIILFRLQ GLVSPTGFTM  120
ERVAYYLFDA LFHSNVNSLA HVKPNGKSTE RNFLGALKLL HVAYPYIRIP QFTANQCILE  180
AVAAAGGASN VGIHVIDFDI MEGMQWPPLM EALRNNGNYH VTGHLRITAI KWADNEEGES  240
LLYSSDTGRR LSEYASSVGI PFSFQEMDLA GLKDVLPQEG ELLVVNCMWQ LPHMFNLRNK  300
SQLLEFLVGA RHLNPVAVTL ATGPHGAERN RANFLESFCR CLEELCAIFD SLEAGLPEHG  360
LARAMVERTF FGPAMSSRVM SYGLAANRQS NVVGLPLDCG YGEGSISNAN MLYARYTLLC  420
SGGSRSYRVE SVGHHQLVLK WASTPLVWIS TWKSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-27834534375GRAS family transcription factor containing protein, expressed
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-54GRAS family protein