PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10426942g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 256aa MW: 28672.4 Da PI: 7.9029

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10426942g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.9	1e-28	153	211	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG K k+ ++prsYYrCt +gC+vkk+ver+a+dp +++ tYeg+Hnhe MA_10426942g0010 153 VDDGYKWRKYGTKILKSRPHPRSYYRCTESGCSVKKRVEREATDPGLLVSTYEGTHNHE 211 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.9E-30	141	213	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-26	146	213	IPR003657	WRKY domain
PROSITE profile	PS50811	30.044	148	213	IPR003657	WRKY domain
SMART	SM00774	2.9E-29	153	212	IPR003657	WRKY domain
Pfam	PF03106	5.7E-24	154	211	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
METWKNRDHF HRSLDNPQCV DPCLDPINSL FCDNHIAANP YNATFSQELN IYPHDVPEPK 60 IWKDAWSDEF VVDKNGDCGL PVNEVKTIEA MACKSPAPQF FPNLEEQLSG DISGSKKSVK 120 AGEIADGSKR RKIRKSEKGP VCVFKTRSES NTVDDGYKWR KYGTKILKSR PHPRSYYRCT 180 ESGCSVKKRV EREATDPGLL VSTYEGTHNH ECPSVIYYIG KPIILQQPPG SNPAIILVNP 240 GVCSEAVTKF ASQQAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-26	144	214	8	78	Probable WRKY transcription factor 4
2lex_A	8e-26	144	214	8	78	Probable WRKY transcription factor 4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	7e-31	WRKY DNA-binding protein 24