PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10427207g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 201aa MW: 22309.5 Da PI: 6.6814

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10427207g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.6	1e-54	40	143	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw +q +e+a+dfk h+lPlarikki+kadedvkmisaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+ rtdifd MA_10427207g0010 40 QLQAFWGNQmreVEQAQDFKTHSLPLARIKKIMKADEDVKMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIGRTDIFD 132 89****9777799************************************************************************** PP NF-YC 91 flvdivprdel 101 flvdivprde MA_10427207g0010 133 FLVDIVPRDEF 143 ******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.84E-32	36	134	IPR009072	Histone-fold
Pfam	PF00808	2.2E-21	62	125	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.5E-37	63	140	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDQQQPTIPA LPQVGYGTNP YIAPPIGGPP HPQLASYHQQ LQAFWGNQMR EVEQAQDFKT 60 HSLPLARIKK IMKADEDVKM ISAEAPVVFA KACEMFILEL TLRSWIHTEE NKRRTLQKND 120 IAAAIGRTDI FDFLVDIVPR DEFKDEGLVI PRAAGAVPFM GPGDNVPSYY YVAQQAPNMA 180 AYAPPTQQMR SKAPAPPHGS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-56	48	140	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU579453	0.0	EU579453.1 Picea wilsonii HAP5B mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008775727.1	8e-72	nuclear transcription factor Y subunit C-4-like
Refseq	XP_008775728.1	8e-72	nuclear transcription factor Y subunit C-4-like
Refseq	XP_008775729.1	8e-72	nuclear transcription factor Y subunit C-4-like
Refseq	XP_026656552.1	8e-72	nuclear transcription factor Y subunit C-4-like
Refseq	XP_026656553.1	8e-72	nuclear transcription factor Y subunit C-4-like
Swissprot	Q8LCG7	8e-68	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A9NKR8	1e-147	A9NKR8_PICSI; Uncharacterized protein
TrEMBL	B2LSM2	1e-147	B2LSM2_PICWI; HAP5B
STRING	XP_008775725.1	3e-71	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-70	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]