PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10427358g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 463aa    MW: 53796.7 Da    PI: 7.3471
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10427358g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.81.9e-2093164273
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                       Wt+ e+l+Li++r+e+e r++r+ +k+ lW+e++  +r+++f r ++qC++kwe+l   +k ++eg k+r++
  MA_10427358g0010  93 WTRVETLKLIKLRTELEPRFSRSGRKMELWDEIAVSLRKEQFFRDAQQCRDKWEKLMAGFKDVREGLKDRND 164
                       *******************************************************************99854 PP
2trihelix62.41e-19366444285
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                       W++ evl+Li++r em+ r+ +++++++lWee ++ + ++g++r  kqC+ekw++l   yk + +g++++  ++    +yf +l
  MA_10427358g0010 366 WKRGEVLQLIKLRGEMDGRFANSARRAALWEELADMLGRQGIKRDGKQCREKWDKLMAAYKDVMDGKREE--GD---LSYFVEL 444
                       *****************************************************************99984..33...4566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.03785149IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-488149IPR009057Homeodomain-like
SMARTSM007171.3E-489151IPR001005SANT/Myb domain
CDDcd122031.45E-2291156No hitNo description
PfamPF138376.0E-1491163No hitNo description
PROSITE profilePS500908.188358422IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-5359422IPR009057Homeodomain-like
SMARTSM007170.045362424IPR001005SANT/Myb domain
PfamPF138372.8E-16364446No hitNo description
CDDcd122039.41E-21364428No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEEPLQIINS SPIQQQHDQD DDDHGHGHEE EVIPHALLPP PGDTCIVPYI MPVSTSTAEK  60
HPPQQTNIAF NGPETEEDDK KRDREHKKRS KNWTRVETLK LIKLRTELEP RFSRSGRKME  120
LWDEIAVSLR KEQFFRDAQQ CRDKWEKLMA GFKDVREGLK DRNDNGFKDV REGLKDRNDN  180
PYYDDLHPLL SGKCLRKENL KKEGDSAHNE NLNSRHFDIS GREMYENRDT DEDDDDMLLE  240
KPYFKKRKRC GKYVPVTDIE AVKTLLEAVI SRQQRFFKEL LDSLERKEQI REQLRQERDE  300
KWRAEERAHR NVFNNAMILL AQKLLGERVA VSAAETAMGN SVGGGVVSTS DTLRQGSGPK  360
KRSKNWKRGE VLQLIKLRGE MDGRFANSAR RAALWEELAD MLGRQGIKRD GKQCREKWDK  420
LMAAYKDVMD GKREEGDLSY FVELRAIVGG RPDEVKVQTM LMP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1171430.0BT117143.1 Picea glauca clone GQ03813_L16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.11e-137trihelix transcription factor GTL1-like
TrEMBLA0A0D6QU720.0A0A0D6QU72_ARACU; Uncharacterized protein
STRINGPP1S224_109V6.11e-136(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1063658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-16Trihelix family protein