PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10427394g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 221aa    MW: 25009.2 Da    PI: 5.6461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10427394g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28e-1067109855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR+++N+a+ +Lr+++Pk +      K++K +i   A+ ++ +Lq
  MA_10427394g0020  67 SERKRRKKLNDALYTLRSVVPKiS------KMDKQSIIGDAISHVLDLQ 109
                       6*********************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.00559108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-1563124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1165114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.46E-1166113No hitNo description
PfamPF000101.3E-767109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1367122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDTPVQYTVE ALKSDYYEDQ NNQLWMDNMD EIAGHLDLDD RDPEIMGVSK PAAKTNHFQS  60
AFKNLHSERK RRKKLNDALY TLRSVVPKIS KMDKQSIIGD AISHVLDLQK KIQEIQGEIE  120
GLCSSNKGED HTQISPDMMK PNLEKRSTES GDAKKSVDNF KHGKVLEGKI VEICNAGKDE  180
IYHVRIECNK DAGVLVQSLE NVRADKLEDM IRQTMTSDCS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774ERKRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6778710.0EF677871.1 Picea sitchensis clone WS02776_M23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPT71e-136B8LPT7_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-19FER-like regulator of iron uptake