PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10428916g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HD-ZIP

Protein Properties

Length: 132aa MW: 15242.2 Da PI: 6.5389

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10428916g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.6	1.4e-20	71	124	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k MA_10428916g0010 71 KKRRLSADQVHFLEKSFEVDNKLEPERKTQLARDLGLQPRQVAVWFQNRRARWK 124 56689************************************************9 PP
2	HD-ZIP_I/II	107.6	9.4e-35	71	132	2	63
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdy 63 kkrrls++qv++LE+sFe ++kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE++y MA_10428916g0010 71 KKRRLSADQVHFLEKSFEVDNKLEPERKTQLARDLGLQPRQVAVWFQNRRARWKTKQLEREY 132 9***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.17E-20	61	128	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	66	126	IPR001356	Homeobox domain
SMART	SM00389	9.8E-20	68	130	IPR001356	Homeobox domain
CDD	cd00086	2.98E-17	69	127	No hit	No description
Pfam	PF00046	7.7E-18	71	124	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.0E-21	73	131	IPR009057	Homeodomain-like
PRINTS	PR00031	2.6E-6	97	106	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	101	124	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.6E-6	106	122	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MASNGVMFNA SNRNLIVMVN ETPSFEADST PLTSLDGVMK SVSKRPFYNT LDAEEAGDED 60 LLDECVHQPG KKRRLSADQV HFLEKSFEVD NKLEPERKTQ LARDLGLQPR QVAVWFQNRR 120 ARWKTKQLER EY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	126	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF676313	0.0	EF676313.1 Picea sitchensis clone WS02730_N05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010242341.1	1e-46	PREDICTED: homeobox-leucine zipper protein HAT5
Swissprot	Q02283	8e-33	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	B8LKP4	2e-90	B8LKP4_PICSI; Uncharacterized protein
STRING	XP_010242341.1	5e-46	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-34	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]