PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10430030g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Nin-like
Protein Properties Length: 489aa    MW: 55235.7 Da    PI: 8.2202
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10430030g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.41.1e-26331380352
            RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       ++i l+dl+kyF+ pi++A+++L+v+lTvLKr+CR++GI+RWPhRkiksl
  MA_10430030g0010 331 ANIALKDLAKYFDVPITEASRSLKVGLTVLKRKCREFGIPRWPHRKIKSL 380
                       79**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.951315400IPR003035RWP-RK domain
PfamPF020424.3E-22332380IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MESHSTSENS PSHLHLCALA VFQNLLNEEL IKSVHLYQLG DGTISAIQRE FMFCPSSYKQ  60
IGLDNIPPVL VCRKENVQEF MANLQEGEER GLWICILHYN CNLRPTNFTI PNILNLARNP  120
ALNTIPELAI DLDRVARFKE ALDSSHPLKN LGEKMLNCEL PDIQSSFLSI EGFWPAIPGL  180
TTVQDCIDDA LSKPSNVIES PLHIDQIDDS YGIRNIYKED NPNPNPNPRQ LITPNLKGCS  240
SCNPNEKENH TADQKSSLSI VDMAVFQSTK HSHAPQNPKN DASEDPSMLC SKKTNEELPS  300
SAGVKGKKRR ASSEEKDENR QIHRAPTQRV ANIALKDLAK YFDVPITEAS RSLKVGLTVL  360
KRKCREFGIP RWPHRKIKSL DSLIQDLQEE TKRQEREDKA AAMAAMKRTR ILETERQKIE  420
KKPGIDIQKD TKRFRQDIFK RRHKARALKK KHNSSNSNSE DGDPSEELPS VSTILSLMID  480
KARTSPSTN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0788041e-102FJ078804.2 Pinus taeda isolate 7711 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788051e-102FJ078805.2 Pinus taeda isolate 7721 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788061e-102FJ078806.2 Pinus taeda isolate 7709 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788071e-102FJ078807.2 Pinus taeda isolate 7710 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788081e-102FJ078808.2 Pinus taeda isolate 7718 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788091e-102FJ078809.2 Pinus taeda isolate 7719 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788101e-102FJ078810.2 Pinus taeda isolate 7713 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788111e-102FJ078811.2 Pinus taeda isolate 7716 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788121e-102FJ078812.2 Pinus taeda isolate 7714 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788131e-102FJ078813.2 Pinus taeda isolate 7717 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788141e-102FJ078814.2 Pinus taeda isolate 7715 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788151e-102FJ078815.2 Pinus taeda isolate 7722 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788161e-102FJ078816.2 Pinus taeda isolate 7723 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788181e-102FJ078818.2 Pinus taeda isolate 7724 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788191e-102FJ078819.2 Pinus taeda isolate 7707 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788201e-102FJ078820.2 Pinus taeda isolate 7720 anonymous locus 0_6885_01 genomic sequence.
GenBankFJ0788211e-102FJ078821.2 Pinus taeda isolate 7712 anonymous locus 0_6885_01 genomic sequence.
GenBankJQ2613631e-102JQ261363.1 Pinus radiata isolate 7725 hypothetical protein (0_6885_01) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009344678.11e-57(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.13e-37RWP-RK domain-containing protein