PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10430231g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 216aa    MW: 24603.8 Da    PI: 8.1005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10430231g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-17651251
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51
                      +y+GVr++  +g+Wv+eIr+p        +r++lg+f tae+Aa a+++a+ 
  MA_10430231g0010  6 RYRGVRQRQ-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAAHAYDEAAV 51
                      69****999.**********8.....334*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.53E-29566No hitNo description
SMARTSM003801.5E-35670IPR001471AP2/ERF domain
PfamPF008473.4E-10651IPR001471AP2/ERF domain
PROSITE profilePS5103220.837664IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-31664IPR001471AP2/ERF domain
PRINTSPR003679.2E-11718IPR001471AP2/ERF domain
PRINTSPR003679.2E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAKPQRYRGV RQRQWGSWVS EIRHPLLKTR VWLGTFETAE DAAHAYDEAA VLMCGSDHAK  60
TNFTYDPNAP PSRKSSFLSA SLTAKLRQCY SASLNIEMQQ STANKRHPRP PVMTHFLTYL  120
RLDTEKSDLG IWRKRAGKQS ESKWVMTVKL GSGSDGDRRA PPKQEETKDV MEEETEDVIA  180
MEMIEELLHP TSVEFSSQTD PSHMCNGKNV MRAEFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-15269168ATERF1
3gcc_A5e-15269168ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1107881e-140BT110788.1 Picea glauca clone GQ03227_P10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393916.17e-65ethylene-responsive transcription factor ERF003-like
TrEMBLA0A2K1JHW12e-63A0A2K1JHW1_PHYPA; Uncharacterized protein
STRINGPP1S79_25V6.11e-63(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-37ERF family protein