PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10430319g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 649aa    MW: 71935.5 Da    PI: 4.8986
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10430319g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.73.8e-1372736332373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL++cAeav+s++l+l+++lL+rl elasp+g+pm+R+aayfte+L  r+++ ++++++ +    +    +++ ++ ++l++++sPi+kf 
  MA_10430319g0010 273 ANLLIACAEAVTSKNLQLVNRLLSRLGELASPEGSPMHRVAAYFTEGLTLRVTKLWPHIFQPIVGDLDL--CEEDLMTGFQLLNHTSPIPKFF 363
                       689*********************************************************988777665..478888899************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       + taN+ Il+a+e ++rvHiiDfdi+qGlQWpaL+++LasRp++p ++RiTg+g+    ske l+ tg+rLa fAe+l++pfef++ v+++le
  MA_10430319g0010 364 QYTANEVILKAFEDKDRVHIIDFDIKQGLQWPALFHSLASRPRPPSHVRITGIGE----SKEDLQDTGDRLAGFAEALNLPFEFHA-VVDKLE 451
                       *******************************************************....***************************.7***** PP

              GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       d++l++L+vk++E++aVn++lqlh++l ++++       +L l++s++P vvvvveqea+hn++ F  rfl+al+yysa+fds++a+lp++s 
  MA_10430319g0010 452 DVRLWMLHVKEKETVAVNCMLQLHKTLYDNGAALR---GILGLIQSTKPAVVVVVEQEANHNDQIFEGRFLQALQYYSAIFDSIDANLPSDSP 541
                       ***************************88888777...9****************************************************** PP

              GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       +r k+E++ ++rei+n++aceg er+erhe++e+W++++ee GF++vpl+e++ +qa+ ll +++ + yrv+ e+g l+lgW d+pL+++SaW
  MA_10430319g0010 542 ARLKMEQF-FAREIRNIIACEGPERIERHEKFEHWKQMMEEGGFTAVPLGEREHCQARILLDMFPCKNYRVKLEDGRLTLGWLDQPLYTASAW 633
                       ********.********************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.042246614IPR005202Transcription factor GRAS
PfamPF035141.3E-134273633IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MERRREFTGT MMAKNAETLW ESSTSRENLK RLSDYSAAEG FCEDRAKRLR GSPPEDLTGN  60
FSVNELGSHW FGESSEKIDS ASEIGGSSGP SATLFSSPKQ KNNSYEPRSV LDLVISPGLK  120
PQTSSSLCSQ PMQQLFTETA DYNQGFTISD LQDIQKSSSV LTNLQQPEAL LPRTIIPSSF  180
PFSSNAWVES IISDFASRGQ ADAATNGQPN RTNSSSCSEP LTSHRNDDGN SSGNDSGNGS  240
GPHEEHPSFV QPQSGDGAIS REQTQMEQGL ELANLLIACA EAVTSKNLQL VNRLLSRLGE  300
LASPEGSPMH RVAAYFTEGL TLRVTKLWPH IFQPIVGDLD LCEEDLMTGF QLLNHTSPIP  360
KFFQYTANEV ILKAFEDKDR VHIIDFDIKQ GLQWPALFHS LASRPRPPSH VRITGIGESK  420
EDLQDTGDRL AGFAEALNLP FEFHAVVDKL EDVRLWMLHV KEKETVAVNC MLQLHKTLYD  480
NGAALRGILG LIQSTKPAVV VVVEQEANHN DQIFEGRFLQ ALQYYSAIFD SIDANLPSDS  540
PARLKMEQFF AREIRNIIAC EGPERIERHE KFEHWKQMME EGGFTAVPLG EREHCQARIL  600
LDMFPCKNYR VKLEDGRLTL GWLDQPLYTA SAWAPQEGGN GGASTSSPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-932616368381Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1235530.0BT123553.1 Picea sitchensis clone WS04714_K03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857885.10.0scarecrow-like protein 28
TrEMBLA0A176WCY70.0A0A176WCY7_MARPO; Uncharacterized protein
STRINGERN193520.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-144GRAS family protein