PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10430713g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 453aa    MW: 49933.2 Da    PI: 10.56
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10430713g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.31.1e-14219304286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W+++ +l+Li+a  e+  +l+rg+lk+++W+ev++++     + +  ++ +qCk++++ l+k+yk ++     +   s++++p+f++++
  MA_10430713g0010 219 WSQSATLTLIDAWGERYLELNRGNLKQKHWKEVAEAVngrpGSNKQPKTDVQCKNRLDTLKKKYKVERSKIFAG---STTKWPLFTKMD 304
                       *************************************86655556666778**************999988875...6778*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-23218306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MPRGSSKNYH YLTPIATGSR RRRFRPHLLL KYPTYRPDDG PRASRRPLLA VAGNLIFLRG  60
PHAEWWGPLG LTESLNFLIR RAGAGRYLLL SALRLEHPRG FPACPADFGV LVSVGFGFPI  120
TVFFSLYVKT TMDESNNARR HHHGGGGTAE VVAGGNTGGG GGATNGLSLS LPLPLTMPGS  180
SSAKLSASPP PPPPPPPQPA GEPVEGDRVA APGGRDDIWS QSATLTLIDA WGERYLELNR  240
GNLKQKHWKE VAEAVNGRPG SNKQPKTDVQ CKNRLDTLKK KYKVERSKIF AGSTTKWPLF  300
TKMDELIGPA RKLHHHHPQP LPLPPPPPMR PRRHPIESSP NPLNTATSPD MTESCLNGFN  360
GNPSSAKRRK TVAVAVDNPD SSPLKELAGA ILKFGEVYER TEVVKHQQMI DLEKHRMEFA  420
KDLELQRMQL FVQTQLELAK IKHAKHGNTE HYL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0858610.0EF085861.1 Picea sitchensis clone WS02910_O22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024531829.14e-75trihelix transcription factor ASIL2-like
TrEMBLA9NWZ61e-174A9NWZ6_PICSI; Uncharacterized protein
STRINGEFJ278849e-71(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-50sequence-specific DNA binding transcription factors