PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10430769g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 179aa    MW: 20144.6 Da    PI: 8.2084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10430769g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-193483255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr++  +g+Wv+eIr+p++   +kr++lg+++t+++Aa+a++ a ++l+g
  MA_10430769g0010 34 IYRGVRRRG-WGKWVSEIREPRK---KKRIWLGSYDTPQMAARAHDVASLCLKG 83
                      69****998.**********843...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-133383IPR001471AP2/ERF domain
CDDcd000181.15E-303393No hitNo description
PROSITE profilePS5103223.0773491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-303492IPR001471AP2/ERF domain
SMARTSM003803.5E-323497IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-223492IPR016177DNA-binding domain
PRINTSPR003671.4E-93546IPR001471AP2/ERF domain
PRINTSPR003671.4E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEEKLQFAPN GNNMVREEKK RVCSEAEGTG PYPIYRGVRR RGWGKWVSEI REPRKKKRIW  60
LGSYDTPQMA ARAHDVASLC LKGKAAFLNF PDLVNAFPRP SSLDPCDIQS AAAQAAHAFN  120
TETSSLQSCS FQGRGEYHDN CNTAGESLRE TSGPDQAENS ELELRLDLWW PSKIIQTKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1735951576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13857RRRGWGKWVSEIREPRKKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1182670.0BT118267.1 Picea glauca clone GQ04004_G10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454728.18e-46PREDICTED: ethylene-responsive transcription factor TINY-like
RefseqXP_018456156.18e-46PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391275e-43TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A0D6R4W12e-46A0A0D6R4W1_ARACU; Uncharacterized protein
STRINGBra009862.1-P7e-43(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.16e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]