PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10431132g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 144aa    MW: 16583.9 Da    PI: 8.2149
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10431132g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.72.2e-551144230374
              GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                       +vk+l P+vv++veqe+++n+++F+ rfle+l+yy+a+f+sl+ +lpres+er++vE+++l+r+ivnv+acegaer+erhe ++kWr+r+++a
  MA_10431132g0020   1 MVKGLAPTVVTLVEQESNTNTSRFFPRFLETLSYYTAMFESLDLTLPRESKERVSVEQHCLARDIVNVIACEGAERVERHEPFGKWRSRFTMA 93 
                       69******************************************************************************************* PP

              GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       GFk+ +ls+++++++k  l+ ++++ yrv e+++ l+lgW +r L+++SaW+
  MA_10431132g0020  94 GFKSHALSSRVNSTIKVALESYNQN-YRVVEKDEVLYLGWLGRDLFVASAWK 144
                       ***********************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.331125IPR005202Transcription factor GRAS
PfamPF035147.5E-531144IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MVKGLAPTVV TLVEQESNTN TSRFFPRFLE TLSYYTAMFE SLDLTLPRES KERVSVEQHC  60
LARDIVNVIA CEGAERVERH EPFGKWRSRF TMAGFKSHAL SSRVNSTIKV ALESYNQNYR  120
VVEKDEVLYL GWLGRDLFVA SAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-211143237378Protein SCARECROW
5b3h_A2e-211143236377Protein SCARECROW
5b3h_D2e-211143236377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1007870.0BT100787.1 Picea glauca clone GQ0044_C22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116878.11e-73scarecrow-like protein 21
RefseqXP_029116879.11e-73scarecrow-like protein 21
SwissprotQ9LDL73e-69PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLE0Z8K81e-88E0Z8K8_PICSI; Phytochrome A-like protein (Fragment)
STRINGGSMUA_AchrUn_randomP18920_0018e-72(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1489644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-71GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]