PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10432332g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

YABBY

Protein Properties

Length: 215aa MW: 23194.2 Da PI: 7.7693

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10432332g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	192	2.9e-59	34	181	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenl.ksnvekeesastsv 96 s++eq+Cyv+CnfC+tilavsvPs+slf++vtvrCGhC +llsvn++ as l a + ++++ +++ + s +++e++a MA_10432332g0010 34 SAAEQLCYVHCNFCSTILAVSVPSSSLFNIVTVRCGHCNHLLSVNMMGASPPLEAGQ---------IQNDYSKDSASSsASPTISERTA---- 113 679****************************************999887776665.........23332222222101222222222.... PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +e+ ++ PPekrqrvPs ynrfikeeiqrika+nPdi h+eafsaaaknWahfP+ihfgl MA_10432332g0010 114 -----NSYAGNEAVKMFS-SIPPEKRQRVPSVYNRFIKEEIQRIKAKNPDIRHKEAFSAAAKNWAHFPHIHFGL 181 .....2223344455555.67*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.2E-65	35	181	IPR006780	YABBY protein
SuperFamily	SSF47095	4.58E-7	125	174	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.9E-4	130	173	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSASPDCSNI DSASIHSGSV ITEGAAMSGC IESSAAEQLC YVHCNFCSTI LAVSVPSSSL 60 FNIVTVRCGH CNHLLSVNMM GASPPLEAGQ IQNDYSKDSA SSSASPTISE RTANSYAGNE 120 AVKMFSSIPP EKRQRVPSVY NRFIKEEIQR IKAKNPDIRH KEAFSAAAKN WAHFPHIHFG 180 LMLENNKQAA IDKGNLREGT QIGTVKDGRM TTNLC

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT124509	0.0	BT124509.1 Picea sitchensis clone WS0474_K18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424060.2	1e-66	putative axial regulator YABBY 2 isoform X1
Swissprot	Q8GW46	3e-61	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D5ADY5	1e-125	D5ADY5_PICSI; Uncharacterized protein
STRING	XP_006487832.1	1e-65	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-62	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]