PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10432538g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 78aa    MW: 8833.86 Da    PI: 7.6747
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10432538g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10851344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT    +++ +a +++ ++   +W+ Ia++++ g++++++k+++
  MA_10432538g0010  8 SWTSKQNKQFEKALALYDKDtpdRWHNIASMVN-GKSAEEVKNHY 51
                      7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.62459IPR017884SANT domain
SMARTSM007177.4E-9557IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-13761IPR009057Homeodomain-like
CDDcd001671.10E-7855No hitNo description
Gene3DG3DSA:1.10.10.605.8E-6861IPR009057Homeodomain-like
PfamPF002492.2E-8851IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MAAQSASSWT SKQNKQFEKA LALYDKDTPD RWHNIASMVN GKSAEEVKNH YEILLEDLKS  60
IEADRVPYPK YKSLSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-29577779RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.12e-34protein RADIALIS-like 3
SwissprotQ1A1734e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2R6PAP83e-33A0A2R6PAP8_ACTCH; Protein RADIALIS-like
STRINGXP_010539897.13e-33(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-33RAD-like 6