PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10433265g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 88aa MW: 9774.74 Da PI: 7.683

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10433265g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.6e-09	20	63	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + +++ +a + + ++ +W+ +a+++ g++++++k ++ MA_10433265g0010 20 NWTSQQNKQFEKALAIYDKDtpdRWHNVASMVT-GKSPEEVKRHY 63 8*****************************9.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.784	16	71	IPR017884	SANT domain
SMART	SM00717	1.6E-8	17	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-6	19	73	IPR009057	Homeodomain-like
CDD	cd00167	3.79E-7	20	67	No hit	No description
Pfam	PF00249	1.0E-6	20	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.71E-13	20	74	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MADQPSSSSG RPSSSNTGTN WTSQQNKQFE KALAIYDKDT PDRWHNVASM VTGKSPEEVK 60 RHYEILLEDL NSIEAGKVPF PKYKSSGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	5e-33	13	87	3	77	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113557	1e-133	BT113557.1 Picea glauca clone GQ03413_A01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021680636.1	1e-36	protein RADIALIS-like 3
Swissprot	Q58FS3	8e-33	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	D5ADC1	9e-38	D5ADC1_PICSI; Uncharacterized protein
STRING	XP_010690880.1	8e-34	(Beta vulgaris)
STRING	POPTR_0005s12390.1	1e-33	(Populus trichocarpa)
STRING	POPTR_0007s13000.1	1e-33	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP347	12	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	1e-33	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]