PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10433513g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family DBB
Protein Properties Length: 174aa    MW: 19287.6 Da    PI: 7.4228
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10433513g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-08434536
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                       C+ +e   +q+fC  ++  lC++C ++ H g
  MA_10433513g0010  4 LCDSCEAAAAQFFCAADEAALCAKCDEKVH-G 34
                      7******99*******************99.5 PP
2zf-B_box19.61.9e-065491437
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      ++C+ +e   + l+C  +++ lC +C +e H g    H
  MA_10433513g0010 54 PRCDICETAAAFLHCSIDGSSLCLQCDMEVHVGgkrtH 91
                      89******99*********************6544445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.566147IPR000315B-box-type zinc finger
SMARTSM003364.0E-9147IPR000315B-box-type zinc finger
PfamPF006431.3E-6342IPR000315B-box-type zinc finger
SMARTSM003361.7E-65196IPR000315B-box-type zinc finger
CDDcd000213.09E-45484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MRTLCDSCEA AAAQFFCAAD EAALCAKCDE KVHGCNKLAG RHVRLQLRES WSVPRCDICE  60
TAAAFLHCSI DGSSLCLQCD MEVHVGGKRT HVRYLLLGQR VELLNGNHIP NGNHIRDEQG  120
NPKTMDTARA WQNKYCQEHR SNGDPSHKTN ISNGNIHNVV SCNKENVQSN GQKD
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0837290.0EF083729.1 Picea sitchensis clone WS0299_F22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517934.17e-56B-box zinc finger protein 18 isoform X3
RefseqXP_024540627.17e-56B-box zinc finger protein 18 isoform X3
SwissprotC0SVM59e-49BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB8LP581e-124B8LP58_PICSI; Uncharacterized protein
STRINGEFJ105481e-55(Selaginella moellendorffii)
STRINGEFJ192921e-55(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-39DBB family protein