PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10434312g0010
Common NameAP2L2
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 279aa    MW: 31085.3 Da    PI: 6.9438
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10434312g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-17212261155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MA_10434312g0010 212 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 261
                       78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-16212269IPR016177DNA-binding domain
PfamPF008472.5E-9212261IPR001471AP2/ERF domain
CDDcd000184.59E-12213268No hitNo description
Gene3DG3DSA:3.30.730.102.6E-17213269IPR001471AP2/ERF domain
PROSITE profilePS5103217.82213269IPR001471AP2/ERF domain
SMARTSM003808.5E-33213275IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MMTVDTSSIE PVGKIVPRSS EETESVCVEA ATATVTHIQS NNETRRRAPF RSEMTESGTS  60
ISSVVNSIAC NENINSLEHE ASSKAVELDG DVLSSNSTQV PRSNEGNHKI FGFSLKIETQ  120
NLTSRGNLLN VKANDEQQKD PACVTRHFFP LHNGQPSEVL MPTECTGGNP FTESHWTTVT  180
SRLPESTEPR KKQAENNKPI KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  240
GFDTAHAAAR AYDRAAIKFR GVDADINFTL TDYQEDLDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190201KKQAENNKPIKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2539710.0AF253971.1 Picea abies APETALA2-related transcription factor 2 (AP2L2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA0A0N7KMH06e-39AP24_ORYSJ; APETALA2-like protein 4
SwissprotB8B0I85e-39AP24_ORYSI; APETALA2-like protein 4
TrEMBLQ9FV330.0Q9FV33_PICAB; APETALA2-related transcription factor 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-33target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Vahala T,Oxelman B,von Arnold S
    Two APETALA2-like genes of Picea abies are differentially expressed during development.
    J. Exp. Bot., 2001. 52(358): p. 1111-5
    [PMID:11432927]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]