PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10434389g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 257aa    MW: 29502.4 Da    PI: 6.3009
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10434389g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.43.8e-16121176256
                       T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F+++++++ + ++  LAk+l+L  rqV vWFqNrRa+ k
  MA_10434389g0010 121 RKKLRLSKEQSALLEESFREHSTLNPQkQKNALAKQLNLRPRQVEVWFQNRRARTK 176
                       778899******************97526889**********************98 PP
2HD-ZIP_I/II120.68.1e-39121212192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       +kk+rlskeq++lLEesF+e+++L+p ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  MA_10434389g0010 121 RKKLRLSKEQSALLEESFREHSTLNPqKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 212
                       69***********************945799*********************************************************9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.985117178IPR001356Homeobox domain
SMARTSM003892.1E-11119182IPR001356Homeobox domain
SuperFamilySSF466891.39E-15120186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-15121176IPR009057Homeodomain-like
PfamPF000461.8E-13121176IPR001356Homeobox domain
CDDcd000862.51E-13121179No hitNo description
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PfamPF021831.1E-11178212IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.3E-22178221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
TPPLPLELLP FRPIASRVGT PPAPSPPFLW FMTNNCREEV TVAETNLSGV VRGGIDMNQV  60
PSTNEYEESS VLQVDALRVV DNGPMTVKRE RERAFDLEAE RDRTCDVSSR TSDEEEIGST  120
RKKLRLSKEQ SALLEESFRE HSTLNPQKQK NALAKQLNLR PRQVEVWFQN RRARTKLKQT  180
EVDCEVLKRC CENLTEENRR LQKELQELRA LKAAPQPCVI GQDNYYMPLP ATTLTXXXXW  240
PLHCDVDSLE CSDRHQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125TRKKLRL
2170178RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0859210.0EF085921.1 Picea sitchensis clone WS0271_A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.13e-76homeobox-leucine zipper protein HAT4-like
SwissprotA2Z1U18e-58HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotQ67UE24e-57HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA9NX561e-159A9NX56_PICSI; Uncharacterized protein
STRINGPP1S42_217V6.11e-75(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-58homeobox from Arabidopsis thaliana