PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10434837g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 257aa    MW: 29877.8 Da    PI: 4.6571
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10434837g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-09196247455
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       + +++k q+ +Le++++++r p+ ++   + + ++L+ + +  WF  +R++e
  MA_10434837g0010 196 KKRMKKVQIATLEKVYRRTRRPTDAMVDNIIHLTNLPRKAIVKWFSDKRMQE 247
                       445899*******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.815190250IPR001356Homeobox domain
SuperFamilySSF466897.7E-10193247IPR009057Homeodomain-like
SMARTSM003894.3E-4194254IPR001356Homeobox domain
CDDcd000865.27E-7195247No hitNo description
PfamPF000463.5E-7196247IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-8197248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCRYCFNCCS FPTWKAHKNE EDEDSLDEDA LEALFIQLEK DLEKDQLSDD DENDMITDEE  60
ISKFEEELKE AISDIDDDEE ALDEYPPLKL ENWQLQKLAA ALEVGRRKVS VKILTEELGL  120
DREIVLDLLR NPPPELLLIQ PVKDNTGSIQ SAIKPDNDNV GSSGSDRKLV DPTSKEASKN  180
EAEVPIFFNQ VQWNRKKRMK KVQIATLEKV YRRTRRPTDA MVDNIIHLTN LPRKAIVKWF  240
SDKRMQESPK VVYKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0878070.0EF087807.1 Picea sitchensis clone WS02753_G02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2C91e-171A9P2C9_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP69271618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.12e-40overexpressor of cationic peroxidase 3