PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10435385g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 148aa    MW: 16950.4 Da    PI: 8.4183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10435385g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-113258127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C ++++tG C++G+ C+++H++
  MA_10435385g0010 32 PGQPDCAHYLKTGDCSFGAACRYNHPK 58
                      5789*********************96 PP
2zf-CCCH30.65.6e-1079103226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       + + C+f++r G+Ck+G+rCkF H+
  MA_10435385g0010  79 GKPTCMFYSRCGICKFGPRCKFDHS 103
                       7899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-43158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8683159IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-83358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-53659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-43758IPR000571Zinc finger, CCCH-type
SMARTSM003560.001477104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5477105IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-779103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-680104IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSSEPIFSAA KAIPTPQPWE IATKRENFPE RPGQPDCAHY LKTGDCSFGA ACRYNHPKES  60
NEQLSACMLS EMGLPLRPGK PTCMFYSRCG ICKFGPRCKF DHSSTINSRT IYKFSISWLC  120
SRCQTNEVLT EFRQHVWNKL LQVNFDWS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1179231e-172BT117923.1 Picea glauca clone GQ03917_G13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019066595.12e-33zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_027768588.12e-33zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ8L7N82e-32C3H57_ARATH; Zinc finger CCCH domain-containing protein 57
TrEMBLA0A2I0JGU34e-33A0A2I0JGU3_PUNGR; Uncharacterized protein (Fragment)
STRINGXP_008389043.12e-33(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1375334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.36e-35zinc finger nuclease 3
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]