PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10435549g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GRAS

Protein Properties

Length: 129aa MW: 14882.1 Da PI: 6.5185

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10435549g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	105.4	8.1e-33	1	99	258	356
GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 +eal+yys++f+sl+a+l+res++r++vE+++l+r+ivn++aceg+er+er e +ekWr+r+++ GF+++pls ++ +++k+ll++ + + y+ MA_10435549g0020 1 MEALNYYSSVFESLDATLSRESRDRVNVEKQCLARDIVNIIACEGEERIERYEVAEKWRARMTMTGFSAYPLSANVKDTVKSLLHQSYCNSYK 93 69************************************************************************************999 PP GRAS 351 veeesg 356 +ee g MA_10435549g0020 94 TKEEGG 99 **9977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.49	1	97	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-30	1	99	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEALNYYSSV FESLDATLSR ESRDRVNVEK QCLARDIVNI IACEGEERIE RYEVAEKWRA 60 RMTMTGFSAY PLSANVKDTV KSLLHQSYCN SYKTKEEGGX XXXXXXXXXX DGWIEFSLRH 120 LLGIKKQGL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106412	1e-144	BT106412.1 Picea glauca clone GQ03001_C01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003526667.1	2e-43	scarecrow-like protein 1
Refseq	XP_003526668.1	2e-43	scarecrow-like protein 1
Refseq	XP_010649367.1	1e-43	PREDICTED: scarecrow-like protein 1
Refseq	XP_014631848.1	2e-43	scarecrow-like protein 1
Refseq	XP_014631849.1	2e-43	scarecrow-like protein 1
Refseq	XP_014631850.1	2e-43	scarecrow-like protein 1
Refseq	XP_019075083.1	1e-43	PREDICTED: scarecrow-like protein 1
Refseq	XP_019075084.1	1e-43	PREDICTED: scarecrow-like protein 1
Refseq	XP_019075085.1	1e-43	PREDICTED: scarecrow-like protein 1
Refseq	XP_028235982.1	2e-43	scarecrow-like protein 1
Refseq	XP_028235983.1	2e-43	scarecrow-like protein 1
Refseq	XP_028235984.1	2e-43	scarecrow-like protein 1
Refseq	XP_028235985.1	2e-43	scarecrow-like protein 1
Refseq	XP_028235986.1	2e-43	scarecrow-like protein 1
Swissprot	Q9SDQ3	4e-42	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A0B4U7X1	1e-60	A0A0B4U7X1_PINRA; SCL7 (Fragment)
STRING	Aquca_014_00370.1	2e-43	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP10802	2	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	2e-44	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]