PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10435549g0050
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 174aa    MW: 20053.2 Da    PI: 8.4973
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10435549g0050genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS183.91.1e-5614169171325
              GRAS 171 elgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                       +l +++ ++ l ak +  d++++ L+++p+EalaVn+++qlh+++desvs++++rd++L++vksl+Pkvv+vveqe+++n+++Fl rf+e l+
  MA_10435549g0050  14 HLVIQLTIHRLEAKkKAGDVQPWILNINPDEALAVNFAFQLHHMPDESVSTKNPRDRLLRMVKSLNPKVVTVVEQEVNTNTAPFLPRFMEVLN 106
                       6779999999966659***************************************************************************** PP

              GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                       yys++f+ l+a+l+res++r++vE+++l+r+ivn++aceg+er+er e ++kWr+r++++GF+
  MA_10435549g0050 107 YYSSVFEPLDATLSRESRDRVNVEKQCLARDIVNIIACEGEERIERYEFAGKWRARMTMVGFS 169
                       **************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.811174IPR005202Transcription factor GRAS
PfamPF035143.9E-5414169IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGIHQKKIPL LLHHLVIQLT IHRLEAKKKA GDVQPWILNI NPDEALAVNF AFQLHHMPDE  60
SVSTKNPRDR LLRMVKSLNP KVVTVVEQEV NTNTAPFLPR FMEVLNYYSS VFEPLDATLS  120
RESRDRVNVE KQCLARDIVN IIACEGEERI ERYEFAGKWR ARMTMVGFSV SSQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2440168197323GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1064120.0BT106412.1 Picea glauca clone GQ03001_C01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526667.11e-74scarecrow-like protein 1
RefseqXP_003526668.11e-74scarecrow-like protein 1
RefseqXP_014631848.11e-74scarecrow-like protein 1
RefseqXP_014631849.11e-74scarecrow-like protein 1
RefseqXP_014631850.11e-74scarecrow-like protein 1
RefseqXP_028235982.11e-74scarecrow-like protein 1
RefseqXP_028235983.11e-74scarecrow-like protein 1
RefseqXP_028235984.11e-74scarecrow-like protein 1
RefseqXP_028235985.11e-74scarecrow-like protein 1
RefseqXP_028235986.11e-74scarecrow-like protein 1
SwissprotQ9SDQ34e-68SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0B4U7X19e-92A0A0B4U7X1_PINRA; SCL7 (Fragment)
STRINGGLYMA06G12701.14e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1080229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.12e-60SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]