PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10435903g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 181aa MW: 20995.9 Da PI: 9.6425

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10435903g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.5	9.7e-18	7	63	3	55
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 k ++t+eq+e+Le l++++++ps +r++L +++ +++ +q+kvWFqNrR +e MA_10435903g0020 7 KYVRYTREQVEALEGLYHQCPKPSSLRRQQLIRECplfsNVDPKQIKVWFQNRRCRE 63 6789**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.69	2	66	IPR001356	Homeobox domain
SMART	SM00389	1.2E-12	4	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.95E-16	7	69	IPR009057	Homeodomain-like
CDD	cd00086	3.05E-13	7	63	No hit	No description
Pfam	PF00046	2.3E-15	7	63	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-17	9	63	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEPESSKYVR YTREQVEALE GLYHQCPKPS SLRRQQLIRE CPLFSNVDPK QIKVWFQNRR 60 CRETQRKEAS RLKSVNRKLN AMNRLLVEEN GRLQTQVSRL VYDNGNFRQH LHNKYVSIAD 120 TNSESVVAIS WPESHMSSGH PPMDASYAGF LSIAEETLKE FLSKAMGTAI EWIQIPGMKI 180 Q

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC477843	0.0	KC477843.1 Larix kaempferi class III homeodomain leucine zipper protein 34 (HDZ34) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009378434.1	8e-87	PREDICTED: homeobox-leucine zipper protein ATHB-15-like, partial
Swissprot	Q9ZU11	8e-77	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	R4UYG4	1e-112	R4UYG4_9SPER; Class III homeodomain leucine zipper protein 34
STRING	XP_009378434.1	3e-86	(Pyrus x bretschneideri)
STRING	evm.model.supercontig_109.22	2e-82	(Carica papaya)
STRING	POPTR_0003s04860.1	1e-81	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	1e-79	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]