PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10436137g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 173aa MW: 20008.4 Da PI: 9.5648

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10436137g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.9	2.6e-16	24	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++ +ps+ +r +L ++ +++ +q+kvWFqNrR ++k+ MA_10436137g0010 24 KYVRYTNEQVEALERAYNECCKPSTGRRLQLIRENpilsNIEPKQIKVWFQNRRCRDKQ 82 5679***************************99999****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-17	8	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.317	19	83	IPR001356	Homeobox domain
SMART	SM00389	4.5E-11	21	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-15	22	86	IPR009057	Homeodomain-like
CDD	cd00086	1.18E-10	24	84	No hit	No description
Pfam	PF00046	6.5E-14	25	82	IPR001356	Homeobox domain
Gene3D	G3DSA:1.20.5.170	1.6E-4	81	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MPSIMDRQTS GEDSDSKGPL DNGKYVRYTN EQVEALERAY NECCKPSTGR RLQLIRENPI 60 LSNIEPKQIK VWFQNRRCRD KQRKETSRLL SWNGKFTAMN QLLLEENERL RKQATQLDSE 120 NQYLRQQLQL LHARAGNNSR SLQQMAVTAN DTISDSVVTS CNGSNTHRNI LHT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269\|PubMed:17804793}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ711058	0.0	KJ711058.1 Pinus tabuliformis clone PtHB3 HB3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791541.1	2e-52	homeobox-leucine zipper protein HOX9-like isoform X1
Refseq	XP_010920423.1	2e-52	homeobox-leucine zipper protein HOX9 isoform X3
Refseq	XP_010920424.1	2e-52	homeobox-leucine zipper protein HOX9 isoform X4
Refseq	XP_016743819.1	5e-53	PREDICTED: homeobox-leucine zipper protein ATHB-15-like
Swissprot	A2Z8L4	6e-49	HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
Swissprot	Q9AV49	6e-49	HOX9_ORYSJ; Homeobox-leucine zipper protein HOX9
TrEMBL	A0A0K0M717	6e-90	A0A0K0M717_PINTB; HB3
STRING	XP_008791541.1	9e-52	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	2e-41	HD-ZIP family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]