PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10436315g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 166aa    MW: 18567.4 Da    PI: 5.6311
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10436315g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.9e-18100165162
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvlt 62 
                       f+k+ tpsdv+k++rlv+pk++ae++     +++e++  l +ed +g++W+++++y+++s++yvlt
  MA_10436315g0020 100 FDKAVTPSDVGKLNRLVIPKQCAEKYfpldVSSSEKGLLLNFEDNTGKVWRFRYSYWNSSQSYVLT 165
                       89****************************55567889***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2693165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-1796165IPR015300DNA-binding pseudobarrel domain
CDDcd100179.38E-1698165No hitNo description
PfamPF023626.8E-15100165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTNFSPMGDD DPEVRFMNEH TKREIVDMLR KHTYDEELEH HSKRIKMIAA RSAAMNNAEA  60
SGLGADVCQE SEGVVDGNAN AASSSTATAD RGGLPREHLF DKAVTPSDVG KLNRLVIPKQ  120
CAEKYFPLDV SSSEKGLLLN FEDNTGKVWR FRYSYWNSSQ SYVLTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-3996165473B3 domain-containing transcription factor NGA1
5os9_B8e-3996165473B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895704.11e-50AP2/ERF and B3 domain-containing transcription factor RAV1-like isoform X1
RefseqXP_015895705.11e-50AP2/ERF and B3 domain-containing transcription factor RAV1-like isoform X2
SwissprotQ9ZWM94e-45RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLD8S6Z71e-51D8S6Z7_SELML; Uncharacterized protein (Fragment)
STRINGEFJ200212e-52(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-45related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]