PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10436654g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 188aa    MW: 20978.7 Da    PI: 5.3387
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10436654g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-162472355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +kG+r +k +g+Wv+eIr p++   + r++lg+++ +e+Aa+a++ a+ +l+g
  MA_10436654g0010 24 FKGIRMRK-WGKWVSEIRIPNS---SGRIWLGSYDNPEKAARAYDFAMYYLRG 72
                      8*****99.**********933...49************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-262381IPR001471AP2/ERF domain
SMARTSM003807.0E-262386IPR001471AP2/ERF domain
PROSITE profilePS5103220.3232380IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-182381IPR016177DNA-binding domain
CDDcd000183.86E-252381No hitNo description
PfamPF008479.6E-102472IPR001471AP2/ERF domain
PRINTSPR003678.1E-82435IPR001471AP2/ERF domain
PRINTSPR003678.1E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MTKPSQNRSC HSSPKSCSLK SWQFKGIRMR KWGKWVSEIR IPNSSGRIWL GSYDNPEKAA  60
RAYDFAMYYL RGSKVKLNFP HCPPKISCAS SLSPPQIQAA AAKFAAEEFR LPSENGAACS  120
SSGLESEGDI DDQQIFSEQG PTVRDSVPLE RMESFGSLNV EDIPPLDVSM EDFGILFPLS  180
EDWGMEIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-151581673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1163201e-105FJ116320.1 Pinus taeda isolate 4490 anonymous locus UMN_5771_02 genomic sequence.
GenBankFJ1163281e-105FJ116328.1 Pinus taeda isolate 4492 anonymous locus UMN_5771_02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021276768.13e-36ethylene-responsive transcription factor ERF017
TrEMBLB8LPP68e-74B8LPP6_PICSI; Uncharacterized protein
STRINGERN055812e-35(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-32ERF family protein