PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10436704g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 321aa    MW: 37569.1 Da    PI: 8.0407
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10436704g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.41e-2468149186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W  +e+++ i++r e+e+++ ++k++k+lWe +s++m+e+gf+rs++qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  MA_10436704g0010  68 QWGFNETKEFIAIRAELEKDFTQTKRNKTLWELISSRMKEKGFRRSSEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 149
                       6999***********************************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.92261125IPR017877Myb-like domain
CDDcd122038.42E-2667132No hitNo description
PfamPF138372.3E-2268151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMMGGGGEVE NMGLGMGVMS ALPLLTPTVA ISSGDHLAAS NNSTVVTNNG AGGGGLNSSI  60
KKDDRIPQWG FNETKEFIAI RAELEKDFTQ TKRNKTLWEL ISSRMKEKGF RRSSEQCKCK  120
WKNLVNRYKG KETSDPENGR QCPFFDELHA IFTERAKTMQ RLMLESEGGN NQPKKKLKRL  180
KGLQGEKSSD DYSDDEEDEE EDSEDERIVR NKKRKADRER QRVTAEKSRA NSMQEVLQDF  240
FQQQQRIENQ WREYAERREQ DRRRLEQDWR QAMENLERER ILMEQVWREK EEQRRAREDG  300
RAEKRDALLT TLLNRLIRED L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A1e-1165139377DNA binding protein GT-1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1133800.0BT113380.1 Picea glauca clone GQ03406_I12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854232.11e-110trihelix transcription factor GT-3b isoform X2
TrEMBLA9NX011e-150A9NX01_PICSI; Uncharacterized protein
STRINGERN156991e-109(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.17e-41Trihelix family protein