PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10437259g0030
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 322aa    MW: 35932.4 Da    PI: 10.2639
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10437259g0030genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.11.7e-21200279186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W+++e+l+Lie+r +m++r++++ + k lWee+s+ + e+g+ r+p qCk+ w +l ++y+ +++gek++     + +py+ +++
  MA_10437259g0030 200 KWKQHETLKLIEMRGNMDNRFKTE-KVKILWEEISASLLEHGIDRGPDQCKSLWASLVTKYESLQQGEKSK-----KAWPYLAEMD 279
                       7********************998.7789****************************************95.....67******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-4191258IPR009057Homeodomain-like
PROSITE profilePS500907.282193256IPR017877Myb-like domain
CDDcd122038.97E-20199260No hitNo description
PfamPF138371.9E-16199281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MRPQKAPSDS AADGKFESQA LLTGKIRITT RCLWVDKGKL LEALQKAAHV ALASCPPNCP  60
IAHIERTIST VLTKVVRKYS SKRPEVVVMA MENISGISAK DLKLERSRKD HNLLGIFEDS  120
APKMTSLQGA KNSSLAASMT ANFFYKSQQG IGHVSPSVSS ITLSNTSKVS DEKYAGLSQV  180
LTETLDVDSS VISPTKKHRK WKQHETLKLI EMRGNMDNRF KTEKVKILWE EISASLLEHG  240
IDRGPDQCKS LWASLVTKYE SLQQGEKSKK AWPYLAEMDK ILSGQSRRDV KRSAWFFAHQ  300
FGRHPVYSFI TTGVQKGIIL VE
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909139.11e-65ribonuclease J isoform X3
SwissprotQ84W568e-23RNJ_ARATH; Ribonuclease J
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP30821521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.13e-25Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]