PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_104862g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 465aa    MW: 52606.2 Da    PI: 6.6075
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_104862g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-08304344446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      WT  E  l+++a  ++G++ + +I++++   Rt+ qc+ ++ k
   MA_104862g0010 304 WTDNERCLFINALSEYGKD-FQSISSHVH-SRTEDQCRTFFCK 344
                      *****************99.*********.********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1363124IPR009057Homeodomain-like
PROSITE profilePS5129315.16575126IPR017884SANT domain
SMARTSM007171.7E-576124IPR001005SANT/Myb domain
PROSITE profilePS5129314.884299350IPR017884SANT domain
SMARTSM007172.4E-7300348IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-11300350IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-7301344IPR009057Homeodomain-like
PfamPF002491.8E-7303344IPR001005SANT/Myb domain
CDDcd001673.56E-6304344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MNVAYFNPAG ALTLAPTSQQ GLLRRRLALD VHLNIHRAFL KMPTMTLDDK GRRFSRILTN  60
NGLVEDPVAV EKERKMINPW TSEEKELFWA KFAIFRKNFG KVASFLEHKT VADCVEFYYK  120
NHKSEYPKKS KKRHCLEKKQ ECNISARPYL STLGNRRHYI SYATSLDVLG AAVALTMDTS  180
QKNRIQGASQ ICNGTQMPLV SEKIRGEVCG KHDNGRTADT DFLGSETEFT AAADVLAGTY  240
GVTSEATGSC IRSTADIPES FYKKPHSMKF MKKTDGMDPP QTYEVDFETC NSTAECHEDN  300
NTDWTDNERC LFINALSEYG KDFQSISSHV HSRTEDQCRT FFCKSRKVLK LDELVSQEQV  360
IEVQRNSAAD LNRGHSEMHV DDMSLSNVPT SDKTAETYKS QVMDAARQNA RTEIGLDEAA  420
QVCHPHNIIE REDCKVAQDE EIELEELWKI CKRNLAVAPM EASAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C3e-1737125491NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D3e-1737125491NUCLEAR RECEPTOR COREPRESSOR 2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1053790.0BT105379.1 Picea glauca clone GQ02821_K16 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP32151725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-51MYB family protein