PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10713g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 582aa    MW: 65522 Da    PI: 4.2047
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10713g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08267315247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                       +WTteE++ + ++v++ +       W+  +  ++  R+ k+++s+++++
    MA_10713g0010 267 EKWTTEEEQTFQELVHMNPISsnknFWNYLSVAFP-SRSKKELVSYYFNV 315
                      58****************999999***********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-5265316IPR009057Homeodomain-like
SMARTSM007170.0085265318IPR001005SANT/Myb domain
PROSITE profilePS500906.237268316IPR017877Myb-like domain
CDDcd001672.49E-4268316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MPTEEVAEAV LTNGAIGGSN LCEYGFQMPQ EKISVVHQAK DMETCRSVSN VGNSRSRVPE  60
DLDFDLVSAS SPSFKNMLSD NETMDQACKG CVNIEKYSSS PSVSESGGFC SRTYAEVDCS  120
EGEHFVHYES SAGLGCFYLE HVPHKKVPIG PEFQADIPVC RPEARVFLSD AYDRMSSQPC  180
QAVNTNDDDK YSQSLIGNRV WPLVGSNGVT TKDTVGQGRS TYCSCPDSNS IRCVKEHIEA  240
EREMLKLKLG EAFYSWGFHD MGENVSEKWT TEEEQTFQEL VHMNPISSNK NFWNYLSVAF  300
PSRSKKELVS YYFNVFVLRR RAFQNRLDPD NIDSDDDEAD CTNSEIGISE RLLMTEEDDD  360
SVDESDATEG DELVVESDDE TVDTMEDGDE MAASSMLEGQ TMYRSNHDFD FGNLEKKFLE  420
SQDEDTDDVT WDYVGHSNIH SNLIEGQYLQ DDSCMSYEWN HEKKSSGSTW IRTAGFPVVE  480
DEKVKATTSF NHCCKGQQMD INNVSDMLCE DIKQKGFLSR KEEFVIDGHC SLLDPSDSKL  540
WDIALVTSLK ADTDRLVSTC SMIKEIFGDE ARDNEKCRNR TI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1088600.0BT108860.1 Picea glauca clone GQ03201_O12 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP294745