PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_108542g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 119aa    MW: 13754.4 Da    PI: 6.1213
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_108542g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-142267146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+WT eEd +l  +++++G g+W+  ar  g++Rt+ +c++rw++
   MA_108542g0010 22 KGPWTVEEDMQLTGYIRLHGEGRWSFLARAAGLNRTGRSCRLRWLN 67
                     79******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.6071773IPR017930Myb domain
SMARTSM007172.4E-122171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-182168IPR009057Homeodomain-like
PfamPF002491.0E-122267IPR001005SANT/Myb domain
SuperFamilySSF466896.42E-202390IPR009057Homeodomain-like
CDDcd001671.03E-82469No hitNo description
Gene3DG3DSA:1.10.10.602.4E-56990IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MENISRWGAS DIEDEEEAET RKGPWTVEED MQLTGYIRLH GEGRWSFLAR AAGLNRTGRS  60
CRLRWLNSLR PDLKRSKITP EEERLIIELH GHGLALHGVY QEGRITTLRI TGELESREN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-132290774B-MYB
1h8a_C4e-1318902394MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950397.11e-37myb-related protein 305 isoform X2
SwissprotP813915e-31MYB05_ANTMA; Myb-related protein 305
TrEMBLV4UC014e-36V4UC01_9ROSI; Uncharacterized protein
STRINGcassava4.1_027838m5e-32(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.16e-33myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]