PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_11029g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 268aa MW: 30260.2 Da PI: 7.2864

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_11029g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	166.8	2.8e-52	78	182	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 q++ fw++q ie+a df+nh+lPlarikki+k+dedv+misaeaPv+++kace+fi eltlr+w+h+een+rrtl+k+diaaa+++tdifdflv MA_11029g0010 78 QIEIFWANQmqgIEQAVDFRNHSLPLARIKKIMKSDEDVRMISAEAPVVFAKACEMFINELTLRAWIHTEENRRRTLQKNDIAAAIASTDIFDFLV 173 6789**988889****************************************************************************** PP NF-YC 94 divprdelk 102 divprdelk MA_11029g0010 174 DIVPRDELK 182 ****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.64E-31	61	172	IPR009072	Histone-fold
Pfam	PF00808	6.3E-23	100	163	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.3E-38	101	178	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDKQSTMQHM PIQYDVTPYQ TAQNLPPVVR GTFQQPPTSS YVQAAHAFSL SAHPNQLAYQ 60 HQLHQHQQQQ LLHHQKQQIE IFWANQMQGI EQAVDFRNHS LPLARIKKIM KSDEDVRMIS 120 AEAPVVFAKA CEMFINELTL RAWIHTEENR RRTLQKNDIA AAIASTDIFD FLVDIVPRDE 180 LKEEPVINLG TPTSSLSVAS SGSNAAGANS FPYYYLPNQH SGPHGVIVGK PMDSAIYMQQ 240 PRSPVAYMHN MLQRGHMHAD QSRSPNSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-52	85	178	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	156	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF084647	0.0	EF084647.1 Picea sitchensis clone WS02719_H11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008356118.2	2e-79	nuclear transcription factor Y subunit C-2-like
Refseq	XP_018847918.1	3e-79	PREDICTED: nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	4e-65	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A9NTJ8	1e-121	A9NTJ8_PICSI; Uncharacterized protein
STRING	XP_008346078.1	2e-78	(Malus domestica)
STRING	XP_008356118.1	2e-78	(Malus domestica)
STRING	XP_008372003.1	2e-78	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-64	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]