PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_110607g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 162aa MW: 19147.3 Da PI: 7.9388

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_110607g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	31	86	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe +F+++++p+ ++r+eL+++l+L+ rq+k+WFqN+R+++k MA_110607g0010 31 KKRYHRHTQHQIQELEMFFRECPHPDDKQRQELSRRLSLEPRQIKFWFQNKRTQMK 86 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.63E-20	19	87	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-22	19	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	28	88	IPR001356	Homeobox domain
SMART	SM00389	1.8E-18	29	92	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-18	31	86	IPR001356	Homeobox domain
CDD	cd00086	1.97E-16	31	89	No hit	No description
PROSITE pattern	PS00027	0	63	86	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MREEEFESKS GSENIEGASG EDQDADPRSR KKRYHRHTQH QIQELEMFFR ECPHPDDKQR 60 QELSRRLSLE PRQIKFWFQN KRTQMKAHHE RQDNLMLKSE NEKLRLDNMR YRDALSSISC 120 PNCGGPATLG EISFDEQQLR RPHFGHCCKI RGEASAIFSN TS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931820.1	5e-75	homeobox-leucine zipper protein ROC2
Swissprot	Q0J9X2	7e-71	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A3S4PQ59	3e-73	A0A3S4PQ59_9MAGN; Homeobox-leucine zipper protein HDG2 isoform X4
TrEMBL	Q9FR59	4e-73	Q9FR59_PICAB; Homeobox 1
STRING	ERM93749	8e-73	(Amborella trichopoda)
STRING	XP_008784552.1	1e-72	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	2e-68	homeodomain GLABROUS 2

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]