PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_111469g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRF
Protein Properties Length: 762aa    MW: 82632.1 Da    PI: 9.1766
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_111469g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.6e-25297340144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e
  MA_111469g0010 297 DPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRHRSRKPVE 340
                     79***************************************998 PP
2QLQ55.91.2e-19226261237
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     +F++aQ+++L++Q+l++Ky++a  PvPpeL+ +i+k
  MA_111469g0010 226 PFSPAQWEELEHQALIFKYMMACIPVPPELIIPIRK 261
                     9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.5E-12225261IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.0E-14226260IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.057226261IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.898297341IPR014977WRC domain
PfamPF088791.3E-21298340IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MDNYSGTGNL GDGEEGRSSS NLVSGLATEH RLRLPGMGGM MLVSSTSPGK QQPRCRAASE  60
MEVGVELDNF RSGRVGGPTK IARTDGYTPF VCREQKMQIQ MDSASANASA SDHHLPVLRN  120
RSGSDNSSAC LVSEGRPRLA PSSTNSYASS ERSILNNDGS SSTVSSESRL LRSNDSVLSA  180
TDARHSLRFY RPPAGMPVSS MAMGREFGVM ETGMGMHGVR TGVRPPFSPA QWEELEHQAL  240
IFKYMMACIP VPPELIIPIR KSLHSLPERS PPLPPHHHLS TLTPWSSFHM GFGGNMDPEP  300
GRCRRTDGKK WRCSRDVVPD QKYCERHMHR GRHRSRKPVE GHTAAVTSQS NSISAPSSLS  360
LAAAVTTSSN VLARPSISVN SLQKLHQPGP LLGTKNLSFT GSGSQIQQYP LQAAAGAVTS  420
SSPSAMGNKD YRYVNGMKGG EMDEHILFSE ASGSSTITNQ WRFTAASKAA VPYIPQSKTN  480
NNDSLLQYSS SPQLRTLLGQ NLGIVTEGNQ VAGIHMNPPD KQQQQQRRQQ HSFLSTDYGR  540
MQEAMREPEE QPLRHFFDEW PRSRNPWATD VEDETSNRNS STTQLSISIP MPSSNFSATN  600
SNSSPRGKLS LTSLKLSMSG DGSDPLGVDP IEMGLAVGMN MSVEDRHRQT QSQHHHHHQA  660
NWVPIAWGNP MGIGGPLAEV LQSSTTPSGC NKNKPGLNLM NDIGWKDNMN NSSSSNKNST  720
SSHSRDSPPS CMQTSSPAER GVAGRMGSAI DHPVSTHKGI GH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1197240.0BT119724.1 Picea glauca clone GQ04109_E22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0M3LBH70.0A0A0M3LBH7_9SPER; Growth regulating factor 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-43growth-regulating factor 2