PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_112273g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

YABBY

Protein Properties

Length: 180aa MW: 20236.5 Da PI: 7.1882

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_112273g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	196.1	1.6e-60	10	156	7	170
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 +++Cyv+C+fC+tilav+vP +sl+++vtvrCGhCt+llsvn+a q l+ + + ++++n+ +++ +++ as+s++ + MA_112273g0010 10 QDHLCYVHCDFCSTILAVNVPCNSLYRIVTVRCGHCTNLLSVNMAPLLQSLPQQAQ--------------QQGQNTGTHDYTRDPASSSTAINDA 90 69****************************************999998887765..............5566666666666776666666442 PP YABBY 102 .senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ne+ +p r Pek+qrvPsaynrfi++eiqrika+nP+i+h+eafsaaaknWah+P+ihfgl MA_112273g0010 91 yPDNEETRIP----SYRQPEKKQRVPSAYNRFIRDEIQRIKANNPKITHKEAFSAAAKNWAHYPHIHFGL 156 1455555554....4899************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-67	10	156	IPR006780	YABBY protein
SuperFamily	SSF47095	4.84E-7	101	149	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	103	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MSTSGFEVGQ DHLCYVHCDF CSTILAVNVP CNSLYRIVTV RCGHCTNLLS VNMAPLLQSL 60 PQQAQQQGQN TGTHDYTRDP ASSSTAINDA YPDNEETRIP SYRQPEKKQR VPSAYNRFIR 120 DEIQRIKANN PKITHKEAFS AAAKNWAHYP HIHFGLMLDN RRQSNSEDGG DVLNAEVCNN

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF086340	0.0	EF086340.1 Picea sitchensis clone WS02745_E15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247851.1	1e-65	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q8GW46	7e-59	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A9NY99	1e-132	A9NY99_PICSI; Uncharacterized protein
STRING	XP_010247851.1	4e-65	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-57	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]