PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_1125897g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 117aa    MW: 13553.5 Da    PI: 6.5156
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_1125897g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS121.31.2e-371116258373
             GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                      +eal+yys++f+sl+a+l+res++r++vE+++l+r+iv+++aceg+er+er e +ekWr+r+++a F+++pls ++ +++k+ll++ + + y+ 
  MA_1125897g0010   1 MEALNYYSSVFESLDATLSRESRDRVNVEKQCLARDIVKIIACEGEERIERYEVAEKWRARMTMARFSAYPLSANVKDTVKSLLHQSYCNSYKT 94 
                      69**************************************************************************************999*** PP

             GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                      +ee g++++gW d  ++++SaW
  MA_1125897g0010  95 KEEGGAMYFGWLDIIIIVASAW 116
                      ********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.1E-351116IPR005202Transcription factor GRAS
PROSITE profilePS5098519.534197IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MEALNYYSSV FESLDATLSR ESRDRVNVEK QCLARDIVKI IACEGEERIE RYEVAEKWRA  60
RMTMARFSAY PLSANVKDTV KSLLHQSYCN SYKTKEEGGA MYFGWLDIII IVASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-151116264378Protein SCARECROW
5b3h_A2e-151116263377Protein SCARECROW
5b3h_D2e-151116263377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1064121e-173BT106412.1 Picea glauca clone GQ03001_C01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649367.12e-52PREDICTED: scarecrow-like protein 1
RefseqXP_019075083.12e-52PREDICTED: scarecrow-like protein 1
RefseqXP_019075084.12e-52PREDICTED: scarecrow-like protein 1
RefseqXP_019075085.12e-52PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ34e-47SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0B4U7X18e-73A0A0B4U7X1_PINRA; SCL7 (Fragment)
STRINGAquca_014_00370.19e-52(Aquilegia coerulea)
STRINGVIT_04s0044g01370.t019e-52(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1080229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.12e-49SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]