PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_11285g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 193aa MW: 21795.8 Da PI: 6.8618

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_11285g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130	1e-40	35	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ca+Ck++r+kC+++Cvlapyfp+++p+kf vh++FG+ +v+kll++lp e+r da+s++vyeA r+rdPv+G+vg+i++lq+++++l+++la+ MA_11285g0020 35 PCAGCKIQRKKCSEKCVLAPYFPQNNPEKFLLVHRIFGNGHVIKLLQDLPAEQRGDAVSTMVYEASERIRDPVHGCVGIINELQNKVAELQSQLAS 130 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MA_11285g0020 131 AQAE 134 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.369	34	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-40	35	132	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MVKRFRISKK TVTKHSNGKM SEATAFKSQT WSTSPCAGCK IQRKKCSEKC VLAPYFPQNN 60 PEKFLLVHRI FGNGHVIKLL QDLPAEQRGD AVSTMVYEAS ERIRDPVHGC VGIINELQNK 120 VAELQSQLAS AQAEITNITR QHVNLLPLVT EYHEVSDPNF FCLSPQESED MTHTSSSVLD 180 DLDPLELWEP LWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-35	25	147	1	123	LOB family transfactor Ramosa2.1
5ly0_B	4e-35	25	147	1	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT109375	0.0	BT109375.1 Picea glauca clone GQ03207_L09 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007205910.2	2e-54	LOB domain-containing protein 1
Swissprot	Q9LQR0	2e-51	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	B8LQI9	6e-83	B8LQI9_PICSI; Uncharacterized protein
STRING	XP_008224697.1	1e-53	(Prunus mume)
STRING	EMJ07109	8e-54	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-42	LOB domain-containing protein 1