PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_1130033g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GRAS

Protein Properties

Length: 145aa MW: 16817.2 Da PI: 6.2606

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_1130033g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	157.6	1.1e-48	1	144	230	373
GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 +vksl+ kvv+v+eqe+++n+++F +f+eal+yys++f+sl+a+l+res++r++vE+++l+r+ivn++aceg+e +er e ekWr+r+++a MA_1130033g0010 1 MVKSLNHKVVTVAEQEVNTNTAPFIPQFMEALNYYSSVFESLDATLSRESRDRVNVEKQCLARDIVNIIACEGEEMIERYEVTEKWRARMTMAR 94 69****************************************************************************************** PP GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 F+++pls ++ +++k+ l+ + + y+ +ee g +++ W dr L+++SaW MA_1130033g0010 95 FSAYPLSANVKDTVKSFLHPSYCNSYKTKEEGGVMYFVWLDRILITTSAW 144 ******************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	3.9E-46	1	144	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	24.116	1	125	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MVKSLNHKVV TVAEQEVNTN TAPFIPQFME ALNYYSSVFE SLDATLSRES RDRVNVEKQC 60 LARDIVNIIA CEGEEMIERY EVTEKWRARM TMARFSAYPL SANVKDTVKS FLHPSYCNSY 120 KTKEEGGVMY FVWLDRILIT TSAWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-20	1	144	237	378	Protein SCARECROW
5b3h_A	5e-20	1	144	236	377	Protein SCARECROW
5b3h_D	5e-20	1	144	236	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106412	0.0	BT106412.1 Picea glauca clone GQ03001_C01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010649367.1	1e-64	PREDICTED: scarecrow-like protein 1
Refseq	XP_019075083.1	1e-64	PREDICTED: scarecrow-like protein 1
Refseq	XP_019075084.1	1e-64	PREDICTED: scarecrow-like protein 1
Refseq	XP_019075085.1	1e-64	PREDICTED: scarecrow-like protein 1
Swissprot	Q9SDQ3	4e-61	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A0B4U7X1	2e-88	A0A0B4U7X1_PINRA; SCL7 (Fragment)
STRING	Aquca_014_00370.1	4e-64	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP10802	2	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	2e-63	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]