PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_1139g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 241aa    MW: 26868.5 Da    PI: 8.6496
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_1139g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.9e-125882327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  ++ C +++rtG C yG++C+F+H+p
  MA_1139g0010 58 EPDCAYYMRTGLCGYGPNCRFNHPP 82
                  689********************97 PP
2zf-CCCH30.56.2e-10100123326
                   S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   +++C+++++t  C++G +Ck++H+
  MA_1139g0010 100 QPECQYYLKTRACNFGVTCKYHHP 123
                   799********************8 PP
3zf-CCCH31.62.9e-10145170227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C +++rtG Cky   CkF+H++
  MA_1139g0010 145 GEKECAYYMRTGSCKYAVHCKFHHPQ 170
                   6789********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6955583IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-55582IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-95882IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-65882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-56181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.15597125IPR000571Zinc finger, CCCH-type
SMARTSM003561.197124IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7100123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6143171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.793143171IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015143170IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7145170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4149169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEYHRQEENW AMHSNKNNVL TFTASTDMKS IEKAMGKMTL KSSVDPVESG SYPERVDEPD  60
CAYYMRTGLC GYGPNCRFNH PPNLKQAIAS KGEFPERVGQ PECQYYLKTR ACNFGVTCKY  120
HHPCDRNGLG GKIQMNYLGL PMRQGEKECA YYMRTGSCKY AVHCKFHHPQ PATIVSGYGS  180
SGSPTTPASS YPSGLLSWPL PRSPYVPGPR LQGSPTYVPI IFSPSQGVIP MSAWNNYQVS  240
P
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1066601e-165BT106660.1 Picea glauca clone GQ03007_G17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252579.13e-81PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ9SWF96e-71ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D6R4111e-111A0A0D6R411_ARACU; Uncharacterized protein
STRINGXP_010252578.11e-80(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-63zinc finger protein 1