PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_11552g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 465aa    MW: 53169.5 Da    PI: 6.7134
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_11552g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.52.3e-25108206186
       trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfd 83 
                    +Wt+ +v++Li+++ +++e+ ++++           +kk++W++vsk+m+e+g+++sp+qC++k+++lnkryk+++++ +++  +++++++ +++d
  MA_11552g0010 108 KWTDMMVKLLIQVVLYVGEDGGSECedgskkksgilQKKGKWKSVSKVMQEKGCSVSPQQCEDKFNDLNKRYKRLNDILGRGgiACKVVENPSLLD 203
                    7*********************98778888999999*******************************************999777*********** PP

       trihelix  84 qle 86 
                    +++
  MA_11552g0010 204 NMD 206
                    998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-19106231No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MLTGISLDMP VSLSHHPHQH QHQHHSLAHH MPAVAPLSAG NHVSAGHNAE QSLALVESKV  60
IPKNSMACSK GKLTTKSDED EPSFTEDGTD SHLSGGKYKK NSPWQRMKWT DMMVKLLIQV  120
VLYVGEDGGS ECEDGSKKKS GILQKKGKWK SVSKVMQEKG CSVSPQQCED KFNDLNKRYK  180
RLNDILGRGG IACKVVENPS LLDNMDHLSP KEKEDVRKLL SSKHLFFKEM CTYHSGAGMQ  240
FPPDLDGHQC LQSSVTAKGR DGHEAFRMTK EENEGDGEDE ENEDDEDEDV EETNDENGED  300
ADAEGIGNYS KRRKMARNGE EVNFWTSPLS HDYGKPSASH NLNSEMMGVL QDNTKTAWER  360
RQWMRNRTMQ LEEQKVNYQA QAFELEKQRF KWQKFSSKKS RELKRMKLEN ERMKLENERM  420
ALQLRQKELE IEFRRSEVSI NSLAHLMDKY HGREQNELGR GPQIQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1044560.0BT104456.1 Picea glauca clone GQ02810_J16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850180.21e-133putative uncharacterized protein DDB_G0287265
TrEMBLA0A0D6R0051e-140A0A0D6R005_ARACU; Uncharacterized protein
STRINGERN117611e-132(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.17e-85sequence-specific DNA binding transcription factors