 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MA_115810g0010 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 294aa MW: 31934.3 Da PI: 7.7157 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MA_115810g0010 | genome | ConGenIE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 294.7 | 3.7e-90 | 1 | 293 | 1 | 300 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.s 93
m+ d+ + r +g e++ k++ +l+lm++iaerd +i er++a++ekkaa+aerd+a+lqr+ a+++rn al+erd +++al + +
MA_115810g0010 1 MEGDSALDiRDWGTCEES--TKDHPALKLMAVIAERDVAILERDTAIAEKKAAYAERDVALLQREVAISDRNSALLERDAAAAALGYSGHINLtG 93
788888899****77766..899****************************************************************99865546 PP
GAGA_bind 94 alpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesaders 187
+ ++ +++l g k q+ + +v + + +++++a +++k +k++ +++ + + k ++ + ++ +++++ +
MA_115810g0010 94 QRGPLCGTLVGIKVQTVGQT------FPAPVS-EALLAEQPKQTNQADNNIKGQKEPPSNKVFNGCELITPVlKIQQ-NMGDTTGQETNGLLAVV 180
77888888888876665555......222222.11112233334445555555555555554444333333313333.44444455555555789 PP
GAGA_bind 188 kaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282
k+ekk++d + n++++D+s+lP+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP ++++rgaR++grKmS+gaf klL++L a+Gy+l p
MA_115810g0010 181 KHEKKDQDYTENKITFDTSALPIPVCSCTGVPQQCYRWGSGGWQSACCTTSISIYPLPLNPNKRGARLGGRKMSGGAFAKLLARLIADGYSLEYP 275
*********************************************************************************************** PP
GAGA_bind 283 vDLkdhWAkHGtnkfvti 300
vDLk+hWAkHGtn+++ i
MA_115810g0010 276 VDLKNHWAKHGTNRYIRI 293
****************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MEGDSALDIR DWGTCEESTK DHPALKLMAV IAERDVAILE RDTAIAEKKA AYAERDVALL 60
QREVAISDRN SALLERDAAA AALGYSGHIN LTGQRGPLCG TLVGIKVQTV GQTFPAPVSE 120
ALLAEQPKQT NQADNNIKGQ KEPPSNKVFN GCELITPVLK IQQNMGDTTG QETNGLLAVV 180
KHEKKDQDYT ENKITFDTSA LPIPVCSCTG VPQQCYRWGS GGWQSACCTT SISIYPLPLN 240
PNKRGARLGG RKMSGGAFAK LLARLIADGY SLEYPVDLKN HWAKHGTNRY IRIQ
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT122749 | 0.0 | BT122749.1 Picea sitchensis clone WS0454_M16 unknown mRNA. |
| GenBank | FJ982283 | 0.0 | FJ982283.1 Picea sitchensis GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds. |
