PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_116185g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 218aa    MW: 24240.8 Da    PI: 6.3131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_116185g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.7e-16115165255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr ++ +g+++AeI dp +  k +r++l +f taeeAa a+++a+ +++g
  MA_116185g0010 115 HYRGVRKRP-WGKFAAEISDPAK--KGARVWLDTFVTAEEAALAYDRAAFQIRG 165
                     7********.**********844..34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-29114173IPR001471AP2/ERF domain
CDDcd000187.49E-27115173No hitNo description
SuperFamilySSF541711.11E-20115174IPR016177DNA-binding domain
PfamPF008475.6E-12115165IPR001471AP2/ERF domain
SMARTSM003803.7E-32115179IPR001471AP2/ERF domain
PROSITE profilePS5103222.471115173IPR001471AP2/ERF domain
PRINTSPR003676.9E-13116127IPR001471AP2/ERF domain
PRINTSPR003676.9E-13155175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLEMIRHHLL EVEDEMDIID LHHAGGNEPS FSSSSLSFSP TVTWDYIHAT ATASSSCQNS  60
GSRSTSEDSE NEFTEQQSSA SSSVSTIIRS ADVVNVKVKP QPREEEKGEM RQGRHYRGVR  120
KRPWGKFAAE ISDPAKKGAR VWLDTFVTAE EAALAYDRAA FQIRGARALL NFPLAFSSNS  180
ENESAVGHMG HKMKRGREEK DEEWAACDRK SCVNRSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-33112179269ATERF1
3gcc_A7e-33112179269ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA32e-61A9NMA3_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-24ethylene responsive element binding factor 1