PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_116716g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WOX

Protein Properties

Length: 262aa MW: 29029.4 Da PI: 5.7025

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_116716g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.5	3e-20	81	141	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le++F + + +ps+++++e++++l ++e++V++WFqNrRa+ k+ MA_116716g0010 81 RQRWTPSQVQLQILEKMFDQgKGTPSKQKIKEITAELsqhaPISETNVYNWFQNRRARTKR 141 89***************99*************9999***************97 PP
2	Wus_type_Homeobox	91.9	6e-30	80	143	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP++ Q++iLe+++++G tP+k++i++itaeL+++ i+++NV++WFQNr+aR ++kq MA_116716g0010 80 ARQRWTPSQVQLQILEKMFDQGKGTPSKQKIKEITAELSQHAPISETNVYNWFQNRRARTKRKQ 143 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-16	77	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.673	77	142	IPR001356	Homeobox domain
SMART	SM00389	4.6E-14	79	146	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.55E-17	79	144	IPR009057	Homeodomain-like
CDD	cd00086	3.65E-13	81	143	No hit	No description
Pfam	PF00046	5.7E-18	81	141	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	117	140	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEMISPSSTE DVQGIGTGGV GSDHPLGFAM QGVMTEPQLE TLRRQISAVV EQENQMHGLM 60 LGQAIGFDSV MGMAGQKVTA RQRWTPSQVQ LQILEKMFDQ GKGTPSKQKI KEITAELSQH 120 APISETNVYN WFQNRRARTK RKQQNVLSNS GESEMENSLE ASKEKKVKMD ENIVQETQVM 180 RQSSVAFQGY EGVPKQHNAD TQQCRSAVSF SSQASSNALI DFARNACFEQ GFHETRNGPL 240 TGFDESMENG NRLSTGEGYI TI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARTKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FM882156	1e-41	FM882156.1 Pinus sylvestris partial wox13 gene for putative wuschel homeobox protein WOX13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028759540.1	7e-62	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-43	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2I6ECB0	0.0	A0A2I6ECB0_PICAB; WOXG protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-42	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]