PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_120020g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family G2-like
Protein Properties Length: 376aa    MW: 41780 Da    PI: 7.9801
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_120020g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-3351105155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprlrWtpeLHerFv+av+qLGG++kAtPk++l+ m+vkgLtl+h+kSHLQkYRl
  MA_120020g0010  51 KPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSHLQKYRL 105
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.46348108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-3249106IPR009057Homeodomain-like
SuperFamilySSF466893.4E-1751106IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-2451106IPR006447Myb domain, plants
PfamPF002492.4E-1053104IPR001005SANT/Myb domain
PfamPF143791.6E-23147194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MYQMEYPSNP GIVLNHGRAP SQPERQHQQP ALTGSSHYPC DPGVVVSADP KPRLRWTPEL  60
HERFVDAVSQ LGGPDKATPK SVLREMGVKG LTLYHLKSHL QKYRLGKQPH REVSVDRSND  120
GGSSDGGHCL SRMARDSSIT PNHKEAMQIA DALRAQIEVQ RRLHDQLEVQ RRLQLRIEAQ  180
GKYLQAILEK AQQTLASEAS TSAGIEATRA KLADLASKLP TNSVRPNYSA MKFASHDMEQ  240
SLNESESPIE KKRCRKLFHE SNGGNSPTKL RELGLNASSC KTEEEEDEEE EQLIKPTTVE  300
RPAATRALVD ERMAMLVQSN GLSLIQANHE PGLYHPPSML GNCRKVAEGL DLNRKGEGSV  360
PQQGRELDLN AYGWGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-2151107258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-2151107258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-2151107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-2151107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-2151107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-2151107157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-2151107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-2151107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-2151107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-2151107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-2151107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-2151107258Protein PHOSPHATE STARVATION RESPONSE 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249256EKKRCRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0715920.0BT071592.1 Picea sitchensis clone WS02926_I07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566744.11e-70Homeodomain-like superfamily protein
RefseqXP_023747733.11e-70protein PHR1-LIKE 2-like
SwissprotQ94A571e-71PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A3G6JCJ00.0A0A3G6JCJ0_PINTA; Myb family transcription factor PHL3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.15e-71G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]