PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_12053g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 361aa    MW: 40069.7 Da    PI: 4.5267
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_12053g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.8e-1788140456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    ++++t +q+++Le+ Fe  +++  e++ +LAk lgL+ rq+ vWFqNrRa+ k
  MA_12053g0010  88 KRRLTFQQVKRLEKSFEVANKLEPERKIQLAKALGLQPRQIAVWFQNRRARCK 140
                    4578899********************************************99 PP
2HD-ZIP_I/II115.72.7e-3787174289
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                    kkrrl+ +qvk LE+sFe  +kLeperK +la++Lglqprq+avWFqnrRAR ktkq+Ekd++aLk++yd lk++ + L +e+++ ++
  MA_12053g0010  87 KKRRLTFQQVKRLEKSFEVANKLEPERKIQLAKALGLQPRQIAVWFQNRRARCKTKQVEKDFDALKQQYDDLKNKYDILLQENKHFKA 174
                    9**********************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1874143IPR009057Homeodomain-like
SMARTSM003891.1E-1585146IPR001356Homeobox domain
CDDcd000861.46E-1687143No hitNo description
PROSITE profilePS5007116.09987142IPR001356Homeobox domain
PfamPF000461.1E-1488140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1789149IPR009057Homeodomain-like
PRINTSPR000312.4E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000312.4E-5122138IPR000047Helix-turn-helix motif
PfamPF021831.6E-8142175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSCDGSPYHY ANTAMTTEDY SANVMASMIA SCTSVGVQGA ATLTRCECEN KRKSSMSLSA  60
YSGAMDLSDY DIGEEDGSDD CLHFGGKKRR LTFQQVKRLE KSFEVANKLE PERKIQLAKA  120
LGLQPRQIAV WFQNRRARCK TKQVEKDFDA LKQQYDDLKN KYDILLQENK HFKAERLNRE  180
SGNDDQNRNL SDFDFEIEPQ QNSANSSHKT TDVPMELSVK SKICQKCAEP LGDIYPTTTT  240
KEQEGRCCSI MSEAASSIFN IDSPRTIESP PSPPFPQIIA AAAAANSSPE LLVEGSSIGE  300
QIACGLETPP PGHESNCLPD TLPEVEADQI ASLNQAEDTC GNLFYSLDEQ GPLMLWDYWP  360
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARCKTKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0853180.0EF085318.1 Picea sitchensis clone WS02728_G07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVG40.0A9NVG4_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.16e-42HD-ZIP family protein