PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_120969g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 527aa    MW: 57384.5 Da    PI: 7.823
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_120969g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32191246359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+geH h 
  MA_120969g0010 191 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-DGQITEIVYKGEHSHL 246
                     9***************************************.**************95 PP
2WRKY106.11.8e-33388445259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+vkg+++prsYY+Cts +C+v+k+ver+++dpk+v++tYeg+Hnh+
  MA_120969g0010 388 EDGFRWRKYGQKVVKGNPYPRSYYKCTSLKCTVRKHVERASDDPKAVITTYEGKHNHD 445
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-29187248IPR003657WRKY domain
SuperFamilySSF1182901.96E-25188248IPR003657WRKY domain
SMARTSM007742.9E-36189247IPR003657WRKY domain
PROSITE profilePS5081123.342191248IPR003657WRKY domain
PfamPF031065.8E-26191245IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-34375447IPR003657WRKY domain
SuperFamilySSF1182901.31E-28380447IPR003657WRKY domain
PROSITE profilePS5081135.898382447IPR003657WRKY domain
SMARTSM007742.2E-39387446IPR003657WRKY domain
PfamPF031061.2E-25388445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MVLSKPTPSR PTTVRISCPT TTLASFPTVP PAAADHYDRD PDCRSFSELL AGAMASSPPP  60
AESPARTAGT SGGTEDSCAP AMEAPPEPQA SDNHGEAKER TTVVFKPLAK LGTMNPALSS  120
LANLGSFGIS HQQALAQVQA QARAQAQVQS QPVSSLMPVS SSAATFPVHQ NTEQIQRSLP  180
PIPIADRPSF DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC PVKKKVERSH DGQITEIVYK  240
GEHSHLKPQP TRRLPTGSTQ HPNGLDVSGR EMESPRGEKN EYFDVNADQS SPGFYADPVG  300
RTERLALTNV SDSSTPARGV SYGNGSPELS PCLSDDGEGV NRADDEDDDE PVSKRRKKDK  360
KMKDLLAPER SNREPRVVVQ TSDADILEDG FRWRKYGQKV VKGNPYPRSY YKCTSLKCTV  420
RKHVERASDD PKAVITTYEG KHNHDPPVAR NSNQDAAGIS SAGLSGNGAN AAQEKQIQNR  480
LTSFARVSQS AVEGEDRMHV GEVGGVQLMR NNRQSHGEDI EKEGSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-33191447877Probable WRKY transcription factor 4
2lex_A1e-33191447877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359RRKKDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6762460.0EF676246.1 Picea sitchensis clone WS02723_M14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9XI904e-85WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLB8LKI10.0B8LKI1_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10259810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.14e-76WRKY family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]