PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_121643g0010
Common NameWOX4
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WOX
Protein Properties Length: 477aa    MW: 52743.9 Da    PI: 7.2108
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_121643g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.5e-21130189357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t++q+++Le +++   r+p+ae++e+++++l    +++ ++V++WFqN++a+e++
  MA_121643g0010 130 TRWNPTPDQIRILEMFYKGgMRTPNAEQIEHITAQLrqygKIEGKNVFYWFQNHKARERQ 189
                     7*****************99**************************************97 PP
2Wus_type_Homeobox117.56e-38129191365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         tRW+Ptp+Qi+iLe+ yk G+rtPn+e+i++ita+L++yGkie+kNVfyWFQN+kaRerqkq
     MA_121643g0010 129 GTRWNPTPDQIRILEMFYKGGMRTPNAEQIEHITAQLRQYGKIEGKNVFYWFQNHKARERQKQ 191
                        69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.252125190IPR001356Homeobox domain
SuperFamilySSF466896.84E-12126195IPR009057Homeodomain-like
SMARTSM003894.9E-8127194IPR001356Homeobox domain
PfamPF000461.6E-18130189IPR001356Homeobox domain
CDDcd000861.06E-6130191No hitNo description
Gene3DG3DSA:1.10.10.602.2E-7131189IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MANINSVANM PFTCENGGCN KRFRPLVPKL TLSPSSTAPM ANAVWSTQQS HDPYNQLQQA  60
FCSASSGNSV SVSAAACFLE PKISRLDGKA DENSNQRNQI DRLIKGDQQN MKEEQAESCA  120
VQSQPTASGT RWNPTPDQIR ILEMFYKGGM RTPNAEQIEH ITAQLRQYGK IEGKNVFYWF  180
QNHKARERQK QKRNSSMQQV AATAAKKTPT TIIADNPNEL HKPNSNGTYS LYNLPFTTMS  240
EDSRLMFASS SLLALPCSKG LATSLAQVSV DVRTPATTGA KRDGLEVLKR SSHGPPQVQM  300
NDEGSPSKNS MIWDSINSSG EGIITNLALS QVAADMPVNV NSCKRKNRLW QVMTPNEELG  360
LHTESSSESI CLQTSSDPIN PSEYTDEEDH RELQTLQLFP LRPEGSLKSK GETNMDNSML  420
SLHVNPSSTC PYPFREINKS AESSTQKGAI FEDHKYSKAA EFFPNFSADY SFLNSMT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6772430.0EF677243.1 Picea sitchensis clone WS02764_C24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8660.0R9R866_PICAB; WUSCHEL homeobox protein WOX4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-36WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Hedman H,Zhu T,von Arnold S,Sohlberg JJ
    Analysis of the WUSCHEL-RELATED HOMEOBOX gene family in the conifer picea abies reveals extensive conservation as well as dynamic patterns.
    BMC Plant Biol., 2013. 13: p. 89
    [PMID:23758772]